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Issus updating to 1.3





I was going finally to update my ego profile to 1.3 following this guide: https://www.funtoo.org/Upgrade_Instructions/1.3-release

I've followed every step and checked that it worked as intended.

I've just done the this step now (succesfully): 

emerge -auDN @system --ignore-world

Now, the next step would to to run

 emerge -auDN @world

But this one, it fails spectacularly...

These are the packages that would be merged, in order:

Calculating dependencies  .. ....... ...... ...... done!
[ebuild     U  ] x11-misc/util-macros-1.19.2-r1 [1.19.1]
[ebuild     U  ] media-libs/opus-1.3 [1.2.1]
[ebuild     U  ] dev-libs/oniguruma-6.9.0 [6.7.0]
[ebuild     U  ] dev-lang/go-1.11.4 [1.10.7]
[ebuild   R    ] dev-libs/lzo-2.10 [2.10] ABI_X86="(-32*)"
[ebuild     U  ] dev-util/re2c-1.1.1 [1.0.3]
[ebuild  N     ] dev-cpp/tbb-2018.20180312  USE="-debug -doc -examples"
[ebuild     U  ] dev-libs/libpthread-stubs-0.4-r1 [0.4]
[ebuild     U  ] sys-devel/autoconf-archive-2018.03.13 [2017.09.28]
[ebuild  N     ] dev-util/netsurf-buildsystem-1.7
[ebuild     U  ] sys-devel/llvm-common-7.0.0 [6.0.0]
[ebuild  N     ] app-crypt/argon2-20171227  USE="-static-libs"
[ebuild     UD ] app-arch/lzip-1.20 [1.21]
[ebuild     U  ] media-fonts/liberation-fonts-2.00.1-r3 [2.00.1-r2]
[ebuild     U  ] sys-process/lsof-4.91 [4.89-r1]
[ebuild     U  ] media-sound/id3-0.15-r1 [0.15]
[ebuild     UD ] app-arch/unrar-5.6.8 [5.7.1]
[ebuild     UD ] sys-kernel/linux-firmware-20181026 [20190118]
[ebuild     U  ] virtual/ttf-fonts-1-r1 [1]
[ebuild  N     ] dev-libs/libutf8proc-2.2.0_p1-r1
[ebuild     U  ] sys-fs/ddrescue-1.23 [1.22-r1]
[ebuild     UD ] net-misc/rclone-1.43.1 [1.45]
[ebuild     U  ] dev-libs/fribidi-1.0.5 [0.19.7]
[ebuild     U  ] sys-fs/ncdu-1.13 [1.12]
[ebuild     UD ] app-forensics/lynis-2.6.4 [2.7.0]
[ebuild     U  ] dev-libs/gobject-introspection-common-1.58.1 [1.54.1]
[ebuild     U  ] dev-libs/vala-common-0.42.3 [0.38.4]
[ebuild     U  ] media-libs/libpng-1.6.35-r1 [1.6.34]
[ebuild     U  ] media-libs/giflib-5.1.4-r2 [5.1.4]
[ebuild     U  ] media-libs/t1lib-5.1.2-r2 [5.1.2-r1]
[ebuild     U  ] media-libs/freetype-2.9.1-r4 [2.8]
[ebuild  N     ] sys-libs/slang-2.3.2  USE="pcre png readline zlib -cjk -static-libs"
[ebuild     U  ] virtual/logger-0-r1 [0]
[ebuild     U  ] dev-libs/libbsd-0.9.1 [0.8.6]
[ebuild     UD ] sys-power/acpid-2.0.30 [2.0.31]
[ebuild  N     ] media-libs/ladspa-sdk-1.13-r2
[ebuild     U  ] media-libs/libmp4v2-2.0.0-r1 [2.0.0]
[ebuild     U  ] media-video/rtmpdump-2.4_p20161210-r2 [2.4_p20161210-r1]
[ebuild     UD ] dev-libs/libverto-0.2.6 [0.3.0]
[ebuild     U  ] dev-lang/nasm-2.13.03-r1 [2.13.01]
[ebuild     UD ] sys-apps/lm_sensors-3.4.0_p20180923 [3.5.0]
[ebuild     UD ] dev-libs/icu-60.2 [63.1-r1]
[ebuild     U  ] media-libs/libvorbis-1.3.6 [1.3.5]
[ebuild     U  ] media-libs/libmad-0.15.1b-r9 [0.15.1b-r8]
[ebuild     U  ] media-libs/libdc1394-2.2.5-r1 [2.2.5]
[ebuild  N     ] app-text/htmltidy-20090325-r2  USE="-debug -doc -static-libs"
[ebuild     U  ] dev-libs/geoip-1.6.12 [1.6.11]
[ebuild     U  ] media-sound/wavpack-5.1.0-r1 [5.1.0]
[ebuild  N     ] media-libs/gavl-1.4.0-r1  USE="-doc -static-libs"
[ebuild     U  ] dev-libs/libmspack-0.9_alpha [0.8_alpha]
[ebuild     U  ] sys-libs/libunwind-1.2.1-r2 [1.2.1]
[ebuild     U  ] dev-libs/nspr-4.20 [4.19]
[ebuild   R    ] x11-libs/pixman-0.34.0 [0.34.0] ABI_X86="(-32*)"
[ebuild  N     ] dev-libs/libsodium-1.0.16-r2  USE="asm urandom -minimal -static-libs" CPU_FLAGS_X86="aes sse4_1"
[ebuild  N     ] dev-libs/libzip-1.3.0  USE="bzip2 -static-libs"
[ebuild     UD ] app-misc/jq-1.5-r3 [1.6-r2]
[ebuild     U  ] net-misc/ntp-4.2.8_p12 [4.2.8_p11]
[ebuild     U  ] dev-lang/tcl-8.6.8 [8.6.7]
[ebuild     U  ] media-libs/libtheora-1.1.1-r2 [1.1.1-r1]
[ebuild     U  ] dev-util/google-perftools-2.7 [2.6.3]
[ebuild     UD ] app-arch/cabextract-1.9 [1.9-r2]
[ebuild     U  ] dev-libs/leveldb-1.20 [1.18-r2] USE="-test%"
[ebuild     U  ] media-sound/lame-3.100-r1 [3.100]
[ebuild  N     ] media-libs/libsamplerate-0.1.9  USE="sndfile -static-libs"
[ebuild     U  ] dev-libs/libconfig-1.7.2 [1.7.1]
[ebuild     U  ] media-libs/libvpx-1.7.0 [1.6.1]
[ebuild     U  ] dev-util/ninja-1.8.2-r2 [1.8.2]
[ebuild     UD ] dev-python/configargparse-0.12.0 [0.13.0]
[ebuild     U  ] dev-util/scons-3.0.1-r100 [2.5.1] USE="-test%" PYTHON_TARGETS="python3_6%* -python3_4% -python3_5%"
[ebuild     U  ] sys-libs/libcap-ng-0.7.9 [0.7.8]
[ebuild     U  ] sys-process/htop-2.2.0 [2.0.2] PYTHON_SINGLE_TARGET="python3_6%* -python2_7% -python3_4% -python3_5% -python3_7%" PYTHON_TARGETS="python2_7%* python3_6%* -python3_4% -python3_5% -python3_7%"
[ebuild  N     ] x11-base/xcb-proto-1.13  PYTHON_TARGETS="python2_7 python3_6 -python3_4 -python3_5"
[ebuild     U  ] net-dns/bind-tools-9.12.2_p2-r1 [9.11.2_p1] USE="-libedit% -libidn2%"
[ebuild   R    ] app-crypt/mit-krb5-1.16.1  USE="-keyutils*"
[ebuild     U  ] sys-libs/binutils-libs-2.31.1-r1 [2.30-r4]
[ebuild     U  ] dev-libs/libcdio-2.0.0-r1 [2.0.0]
[ebuild     U  ] media-libs/libmtp-1.1.16 [1.1.14]
[ebuild     U  ] net-misc/whois-5.4.0 [5.2.20]
[ebuild     UD ] www-client/lynx-2.8.9_pre16 [2.8.9_p1]
[ebuild     U  ] media-libs/libexif-0.6.21-r2 [0.6.21-r1]
[ebuild     UD ] sys-apps/keyutils-1.5.11-r1 [1.6]
[ebuild     U  ] sys-devel/automake-1.13.4-r2 [1.13.4-r1] USE="-test%"
[ebuild     U  ] media-libs/libjpeg-turbo-2.0.1 [1.5.3]
[ebuild     U  ] media-libs/x265-2.9 [2.6]
[ebuild     U  ] media-libs/game-music-emu-0.6.2 [0.6.1]
[ebuild     U  ] media-gfx/graphite2-1.3.12-r1 [1.3.10]
[ebuild  N     ] dev-cpp/eigen-3.3.5-r1  USE="openmp (-altivec) -c++11 -cuda -debug -doc (-neon) -test"
[ebuild     U  ] dev-libs/tinyxml2-6.2.0 [6.0.0]
[ebuild  NS    ] sys-devel/llvm-7.0.0-r1 [5.0.1] USE="libffi ncurses xml -debug -doc -exegesis -gold -libedit -test -xar" LLVM_TARGETS="AMDGPU BPF NVPTX (X86) -AArch64 -ARM -Hexagon -Lanai -MSP430 -Mips -PowerPC -Sparc -SystemZ -XCore"
[ebuild  N     ] net-libs/libssh2-1.8.0-r2  USE="zlib -gcrypt -libressl -mbedtls"
[ebuild     U  ] media-libs/openal-1.19.1 [1.18.2-r1] USE="-sdl%"
[ebuild   R    ] virtual/jpeg-0-r2 [0-r2] ABI_X86="(-32*)"
[ebuild     U  ] media-libs/libmediainfo-18.08.1 [17.12]
[ebuild  NS    ] virtual/jpeg-62 [0-r2]
[ebuild     U  ] media-libs/libwebp-1.0.0 [0.6.1]
[ebuild     U  ] media-libs/jasper-2.0.14 [2.0.12] USE="-test%"
[ebuild     U  ] media-video/mediainfo-18.08.1 [17.12]
[ebuild     U  ] media-libs/tiff-4.0.10 [4.0.9] USE="webp%* -zstd%"
[ebuild     U  ] media-libs/openjpeg-2.3.0-r1 [2.3.0]
[ebuild     UD ] virtual/python-funcsigs-1 [2]
[ebuild     UD ] dev-libs/apr-1.5.2 [1.6.3]
[ebuild     U  ] dev-libs/apr-1.6.5 [1.6.3]
[ebuild  N     ] sys-auth/realtime-base-0.1
[ebuild     UD ] net-fs/cifs-utils-6.8 [6.8-r1] USE="caps-ng%*"
[ebuild     U  ] sys-fs/mdadm-4.1 [4.0]
[ebuild     U  ] dev-libs/apr-util-1.6.1-r3 [1.6.1]
[ebuild  N     ] media-sound/jack-audio-connection-kit-0.125.0  USE="pam -alsa (-altivec) (-coreaudio) -debug -doc -examples -oss" CPU_FLAGS_X86="sse -3dnow"
[ebuild     U  ] sys-block/parted-3.2_p20-r1 [3.2-r2]
[ebuild  N     ] virtual/jack-0
[ebuild     U  ] www-servers/apache-2.4.38-r1 [2.4.38]
[ebuild     UD ] net-vpn/tor- []
[ebuild     UD ] sys-libs/ldb-1.4.3 [1.4.4]
[ebuild     U  ] sys-apps/smartmontools-6.6-r1 [6.6]
[ebuild     U  ] sys-boot/efibootmgr-16 [15]
[ebuild     UD ] app-misc/neofetch-5.0.0 [6.0.0]
[ebuild     U  ] sys-boot/grub-2.02-r3 [2.02-r1]
[ebuild  N     ] dev-util/meson-0.48.2  PYTHON_TARGETS="python3_6 -python3_5 -python3_7"
[ebuild  N     ] dev-python/numpy-1.14.5  USE="-doc -lapack -test" PYTHON_TARGETS="python2_7 python3_6 -python3_4 -python3_5 -python3_7"
[ebuild     UD ] dev-python/pygments-2.2.0-r1 [2.3.1]
[ebuild  N     ] dev-python/markupsafe-1.0  PYTHON_TARGETS="python2_7 python3_6 -pypy -pypy3 -python3_4 -python3_5 -python3_7"
[ebuild     UD ] net-misc/youtube-dl-2018.10.29 [2019.01.27] USE="offensive%* -test%"
[ebuild     UD ] dev-python/lxml-4.2.5 [4.3.0]
[ebuild     UD ] dev-python/zope-interface-4.5.0 [4.6.0]
[ebuild     U  ] x11-libs/libdrm-2.4.94 [2.4.83]
[ebuild  N     ] dev-python/mako-1.0.7  USE="-doc -test" PYTHON_TARGETS="python2_7 python3_6 -pypy -pypy3 -python3_4 -python3_5 -python3_7"
[ebuild     U  ] dev-vcs/subversion-1.11.0 [1.9.7-r1]
[ebuild     U  ] app-eselect/eselect-php-0.9.5 [0.9.4-r5] USE="fpm*"
[ebuild  N     ] app-eselect/eselect-rust-0.3_pre20150428
[ebuild     U  ] x11-libs/libva-2.2.0 [1.8.3]
[ebuild  N     ] dev-lang/rust-bin-1.32.0  USE="-clippy -doc -libressl -rustfmt" CPU_FLAGS_X86="sse2"
[ebuild     UD ] app-admin/sudo-1.8.25_p1-r1 [1.8.27]
[ebuild  N     ] virtual/rust-1.32.0
[ebuild     UD ] app-crypt/acme-0.28.0 [0.30.1]
[ebuild  N     ] virtual/cargo-1.32.0
[ebuild     UD ] app-crypt/certbot-0.28.0 [0.30.1-r1]
[ebuild     UD ] mail-client/mutt-1.10.1-r1 [1.11.2-r1]
[ebuild     U  ] x11-base/xorg-proto-2018.4_p20180627-r2 [2018.4-r1]
[ebuild  N     ] x11-proto/xextproto-7.3.0
[ebuild  N     ] x11-proto/videoproto-2.3.3
[ebuild  N     ] x11-proto/compositeproto-0.4.2
[ebuild  N     ] x11-proto/resourceproto-1.2.0
[ebuild  N     ] x11-proto/xineramaproto-1.2.1
[ebuild  N     ] x11-proto/dri3proto-1.2
[ebuild  N     ] x11-proto/fixesproto-5.0
[ebuild  N     ] x11-proto/xproxymngproto-1.0.3
[ebuild  N     ] x11-proto/lg3dproto-5.0
[ebuild  N     ] x11-proto/xf86rushproto-1.2.2
[ebuild  N     ] x11-proto/xf86miscproto-0.9.3
[ebuild  N     ] x11-proto/xcalibrateproto-0.1.0
[ebuild  N     ] x11-proto/xf86dgaproto-2.1
[ebuild  N     ] x11-proto/bigreqsproto-1.1.2
[ebuild  N     ] x11-proto/xf86driproto-2.1.1
[ebuild  N     ] x11-proto/inputproto-2.3.2
[ebuild  N     ] x11-proto/trapproto-3.4.3
[ebuild  N     ] x11-proto/presentproto-1.2
[ebuild  N     ] x11-proto/xf86vidmodeproto-2.3.1
[ebuild  N     ] x11-proto/windowswmproto-1.0.4
[ebuild  N     ] x11-proto/randrproto-1.6.0
[ebuild  N     ] x11-proto/applewmproto-1.4.2
[ebuild  N     ] x11-proto/damageproto-1.2.1
[ebuild  N     ] x11-proto/renderproto-0.11.1
[ebuild  N     ] x11-proto/dmxproto-2.3.1
[ebuild  N     ] x11-proto/printproto-1.0.5
[ebuild  N     ] x11-proto/kbproto-1.0.7
[ebuild  N     ] x11-proto/xproto-7.0.32
[ebuild  N     ] x11-proto/xf86bigfontproto-1.2.0
[ebuild  N     ] x11-proto/evieproto-1.1.1
[ebuild  N     ] x11-proto/scrnsaverproto-1.2.2
[ebuild  N     ] x11-proto/glproto-1.4.17
[ebuild  N     ] x11-proto/dri2proto-2.8
[ebuild  N     ] x11-proto/fontcacheproto-0.1.3
[ebuild  N     ] x11-proto/recordproto-1.14.2
[ebuild  N     ] x11-proto/xcmiscproto-1.2.2
[ebuild  N     ] x11-proto/fontsproto-2.1.3
[ebuild     U  ] x11-libs/libICE-1.0.9-r2 [1.0.9-r1]
[ebuild     U  ] x11-libs/libfontenc-1.1.3-r1 [1.1.3]
[ebuild     U  ] x11-libs/libXdmcp-1.1.2-r2 [1.1.2-r1]
[ebuild     U  ] x11-libs/libXau-1.0.8-r1 [1.0.8]
[ebuild     U  ] x11-apps/bdftopcf-1.1 [1.0.5]
[ebuild     U  ] x11-libs/libxshmfence-1.3-r1 [1.2]
[ebuild     U  ] x11-apps/mkfontscale-1.1.3 [1.1.2]
[ebuild     U  ] x11-libs/libxcb-1.13 [1.12-r2]
[ebuild     U  ] x11-libs/libSM-1.2.2-r2 [1.2.2-r1]
[ebuild   R    ] x11-libs/libX11-1.6.6  ABI_X86="(-32*)"
[ebuild     U  ] x11-libs/libXext-1.3.3-r1 [1.3.3]
[ebuild     U  ] x11-libs/libXt-1.1.5-r1 [1.1.5]
[ebuild     U  ] x11-libs/libXfixes-5.0.3-r1 [5.0.3]
[ebuild     U  ] x11-libs/libXrender-0.9.10-r1 [0.9.10]
[ebuild     U  ] x11-libs/libxkbfile-1.0.9-r2 [1.0.9-r1]
[ebuild     U  ] media-video/luvcview-0.2.6-r1 [0.2.6]
[ebuild     U  ] x11-libs/libXmu-1.1.2-r1 [1.1.2]
[ebuild     U  ] x11-libs/libXdamage-1.1.4-r2 [1.1.4-r1]
[ebuild     U  ] x11-libs/libXxf86vm-1.1.4-r1 [1.1.4]
[ebuild     U  ] x11-libs/libXi-1.7.9-r1 [1.7.9]
[ebuild     U  ] x11-libs/libXpm-3.5.12-r1 [3.5.12]
[ebuild  N     ] x11-libs/libXrandr-1.5.1-r1  USE="-static-libs"
[ebuild     U  ] x11-apps/xkbcomp-1.4.2 [1.4.0]
[ebuild     U  ] x11-libs/libXaw-1.0.13-r1 [1.0.13]
[ebuild     U  ] x11-libs/libXtst-1.2.3-r1 [1.2.3]
[ebuild     U  ] x11-apps/xmessage-1.0.5 [1.0.4]
[ebuild     U  ] media-libs/fontconfig-2.13.0-r4 [2.12.4]
[ebuild     UD ] app-text/ghostscript-gpl-9.25-r1 [9.26]
[ebuild     U  ] x11-libs/libXft-2.3.2-r1 [2.3.2]
[ebuild     U  ] media-libs/gd-2.2.5-r1 [2.2.5]
[ebuild     U  ] x11-terms/xterm-337 [331]
[ebuild  NS    ] dev-lang/php-7.2.12 [5.6.40, 7.3.1] USE="acl apache2 argon2 berkdb bzip2 cgi cli ctype curl exif fileinfo filter fpm gd gdbm gmp hash iconv intl ipv6 json mysql mysqli nls opcache pcntl pdo phar posix readline session simplexml sockets sodium spell sqlite ssl threads tidy tokenizer truetype unicode webp xml xmlreader xmlrpc xmlwriter xslt zip zip-encryption zlib -bcmath -calendar -cdb -cjk -coverage -debug -embed -enchant -firebird -flatfile -ftp -imap -inifile -iodbc -kerberos -ldap -ldap-sasl -libedit -libressl -lmdb -mhash -mssql -oci8-instant-client -odbc -phpdbg -postgres -qdbm -recode (-selinux) -session-mm -sharedmem -snmp -soap -systemd -sysvipc -test -tokyocabinet -wddx -xpm"
[ebuild     UD ] dev-lang/php-5.6.38 [5.6.40] USE="cgi* fpm* pcntl* spell* tidy* xmlrpc*"
[ebuild     UD ] app-dicts/aspell-en-2017.01.22.0 [2018.04.16.0]
[ebuild   R    ] dev-php/pecl-geoip-1.1.1-r4 [1.1.1-r4] PHP_TARGETS="(-php7-3%)"
[ebuild  NS    ] virtual/httpd-php-7.2 [7.3]
[ebuild     U  ] x11-libs/cairo-1.16.0-r1 [1.14.12] USE="-utils%"
[ebuild  N     ] dev-util/glib-utils-2.58.3
[ebuild     UD ] app-misc/mc-4.8.21 [4.8.22]
[ebuild     U  ] x11-libs/gdk-pixbuf-2.38.0 [2.36.11] USE="-doc%"
[ebuild     U  ] dev-python/pycairo-1.17.0-r1 [1.15.1] PYTHON_TARGETS="-pypy% -pypy3% -python3_7%"
[ebuild     U  ] media-libs/gstreamer-1.14.4 [1.12.3]
[ebuild     U  ] dev-libs/libsigc++-2.10.1 [2.10.0]
[ebuild     U  ] media-libs/harfbuzz-2.1.1 [1.7.5]
[ebuild   R    ] dev-libs/libcroco-0.6.12-r1  ABI_X86="(-32*)"
[ebuild     U  ] media-libs/libwmf- []
[ebuild     U  ] x11-libs/pango-1.42.4 [1.40.14-r1]
[ebuild     U  ] gnome-base/librsvg-2.45.0 [2.40.20]
[ebuild     U  ] media-gfx/imagemagick- [] USE="-heif%"
[ebuild     U  ] app-editors/vim-core-8.1.1092 [8.1.0847]
[ebuild     U  ] app-editors/vim-8.1.1092 [8.1.0847]
[ebuild  N     ] sys-fs/fuse-common-3.2.6
[ebuild     U  ] sys-fs/fuse-2.9.8 [2.9.7]
[blocks b      ] <sys-fs/fuse-2.9.7-r1:0 ("<sys-fs/fuse-2.9.7-r1:0" is blocking sys-fs/fuse-common-3.2.6)
[ebuild     U  ] sys-fs/ntfs3g-2017.3.23-r1 [2017.3.23]
[ebuild     U  ] sys-fs/mtpfs-1.1-r4 [1.1-r3]
[ebuild     U  ] media-libs/mesa-18.2.8 [17.2.8] USE="-lm_sensors% -test%"
[uninstall     ] app-eselect/eselect-mesa-0.0.10-r1
[blocks b      ] app-eselect/eselect-mesa ("app-eselect/eselect-mesa" is blocking media-libs/mesa-18.2.8)
[ebuild     U  ] virtual/opengl-7.0-r2 [7.0-r1]
[ebuild  N     ] media-libs/opencv-3.4.1-r4  USE="eigen ffmpeg ieee1394 jpeg jpeg2k openmp png python threads tiff v4l webp -contrib -contrib_cvv -contrib_dnn -contrib_hdf -contrib_sfm -contrib_xfeatures2d -cuda -debug -dnn_samples -examples -gdal -gflags -glog -gphoto2 -gstreamer -gtk -java -lapack (-libav) -opencl -openexr -opengl -pch -qt5 -tesseract -testprograms -vaapi -vtk -xine" CPU_FLAGS_X86="avx popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3 -avx2 -fma3" PYTHON_TARGETS="python2_7 python3_6 -python3_4 -python3_5"
[ebuild  N     ] media-plugins/frei0r-plugins-  USE="facedetect scale0tilt -doc"
[ebuild     U  ] media-video/ffmpeg-3.4.5 [3.4.1] USE="frei0r* jack* ladspa* -libdrm% -opencl%"
[ebuild     U  ] media-video/motion-4.1.1-r1 [4.0.1-r2] USE="sqlite%* webp%*"

!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:


  (dev-libs/apr-1.6.5:1/1.6::dev-kit, ebuild scheduled for merge) pulled in by
    >=dev-libs/apr-1.6.2:1= required by (dev-libs/apr-util-1.6.1-r3:1/1::dev-kit, ebuild scheduled for merge)
    ^^             ^^^^^^^^

  (dev-libs/apr-1.5.2:1/1::dev-kit, ebuild scheduled for merge) pulled in by
    dev-libs/apr:1/1= required by (net-libs/serf-1.3.9:1/1::net-kit, installed)
    (and 1 more with the same problem)


  (dev-libs/icu-63.1-r1:0/63.1::core-kit, installed) pulled in by
    >=dev-libs/icu-51.2-r1:0/63.1=[-mgorny(-)] required by (dev-libs/libxml2-2.9.8-r1:2/2::core-kit, installed)
    (and 4 more with the same problem)

  (dev-libs/icu-60.2:0/60.2::core-kit, ebuild scheduled for merge) pulled in by
    <dev-libs/icu-61.1:= required by (dev-lang/php-5.6.38:5.6/5.6::core-server-kit, ebuild scheduled for merge)
    ^             ^^^^ ^


  (dev-libs/leveldb-1.20:0/1::dev-kit, ebuild scheduled for merge) pulled in by
    (no parents that aren't satisfied by other packages in this slot)

  (dev-libs/leveldb-1.18-r2:0/0::gentoo, installed) pulled in by
    dev-libs/leveldb:0/0= required by (games-action/minetest-, installed)


  (media-libs/libvpx-1.7.0:0/5::media-kit, ebuild scheduled for merge) pulled in by
    (no parents that aren't satisfied by other packages in this slot)

  (media-libs/libvpx-1.6.1:0/4::media-kit, installed) pulled in by
    media-libs/libvpx:0/4= required by (media-libs/avidemux-plugins-2.7.0:2.7/2.7::media-kit, installed)


  (media-libs/x265-2.9:0/165::media-kit, ebuild scheduled for merge) pulled in by
    (no parents that aren't satisfied by other packages in this slot)

  (media-libs/x265-2.6:0/146::media-kit, installed) pulled in by
    media-libs/x265:0/146= required by (media-libs/avidemux-plugins-2.7.0:2.7/2.7::media-kit, installed)

NOTE: Use the '--verbose-conflicts' option to display parents omitted above

It may be possible to solve this problem by using package.mask to
prevent one of those packages from being selected. However, it is also
possible that conflicting dependencies exist such that they are
impossible to satisfy simultaneously.  If such a conflict exists in
the dependencies of two different packages, then those packages can
not be installed simultaneously. You may want to try a larger value of
the --backtrack option, such as --backtrack=30, in order to see if
that will solve this conflict automatically.

For more information, see MASKED PACKAGES section in the emerge man
page or refer to the Gentoo Handbook.

so, now I'm unsure about how to proceed...

I also noticed there's a lot of ebuilds that are actually a *downgrade* from the previous 1.2 release? Is that correct?


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There are a fair number of downgrades when moving to 1.3.  1.2 updates continued after 1.3 was frozen.   Chrome and Vivaldi were the only things that were actually an issue to downgrade because they nagged about profile version mismatches.

I also had a good number of dependency knots that I had to untangle.  In some cases I just ended up unmerging packages that were creating major dependency issues and then reinstalling them once the upgrade was complete.

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